Index

A

AdamsBashforthSolver (class in pde.solvers) (class in pde.solvers.adams_bashforth) AdaptiveSolverBase (class in pde.solvers.base) add_figure() (Movie method) add_scaled_colorbar() (in module pde.tools.plotting) AdjacentEvaluator (class in pde.tools.typing) AllenCahnPDE (class in pde.pdes.allen_cahn) append() (FieldCollection method) (StorageBase method) apply() (FieldBase method) (StorageBase method) apply_operator() (DataFieldBase method) asanyarray_flags() (in module pde.tools.cuboid) assert_field_compatible() (FieldBase method) (FieldCollection method) assert_grid_compatible() (GridBase method) attributes (FieldBase property) (FieldCollection property)

attributes_serialized (FieldBase property) (FieldCollection property) average (DataFieldBase property) averages (FieldCollection property) ax (PlotReference attribute) axes (BipolarCoordinates attribute) (BisphericalCoordinates attribute) (CoordinatesBase attribute) (CylindricalCoordinates attribute) (GridBase attribute) (PolarCoordinates attribute) (SphericalCoordinates attribute) axes_bounds (GridBase property) axes_coords (GridBase property) axes_symmetric (GridBase attribute) axis (BoundaryAxisBase property) axis_coord (BCBase property)

B

BasicOutput (class in pde.tools.output) BasicPlottingContext (class in pde.tools.plotting) basis_rotation() (CoordinatesBase method) BCBase (class in pde.grids.boundaries.local) BCDataError BipolarCoordinates (class in pde.grids.coordinates.bipolar) BisphericalCoordinates (class in pde.grids.coordinates.bispherical) bits_per_channel (FFmpegFormat attribute) boundaries (Boundaries property) Boundaries (class in pde.grids.boundaries.axes)

boundary_names (CartesianGrid attribute) (CylindricalSymGrid attribute) (GridBase attribute) (SphericalSymGridBase attribute) BoundaryAxisBase (class in pde.grids.boundaries.axis) BoundaryPair (class in pde.grids.boundaries.axis) BoundaryPeriodic (class in pde.grids.boundaries.axis) bounds (Cuboid property) (SmoothData1D property) buffer() (Cuboid method) bytes_per_channel (FFmpegFormat property)

C

c (CylindricalSymGrid attribute) (GridBase attribute) (PolarSymGrid attribute) (SphericalSymGrid attribute) cache_rhs (PDEBase attribute) cached_method (class in pde.tools.cache) cached_property (class in pde.tools.cache) CahnHilliardPDE (class in pde.pdes.cahn_hilliard) CallbackTracker (class in pde.trackers.trackers) CartesianCoordinates (class in pde.grids.coordinates.cartesian) CartesianGrid (class in pde.grids.cartesian) cell_coords (GridBase attribute) cell_volume() (CoordinatesBase method) cell_volume_data (CartesianGrid property) (CylindricalSymGrid attribute) (GridBase attribute) (SphericalSymGridBase attribute) cell_volumes (GridBase attribute) CellVolume (class in pde.tools.typing) centroid (Cuboid property) channels (FFmpegFormat attribute) check_implementation (PDEBase attribute) check_length() (DictFiniteCapacity method) check_package_version() (in module pde.tools.config) check_rhs_consistency() (PDEBase method) check_value_rank() (BCBase method) (Boundaries method) (BoundaryPair method) (BoundaryPeriodic method) class_type (OnlineStatistics attribute) classmethod() (hybridmethod method) classproperty (class in pde.tools.misc) clear() (FileStorage method) (MemoryStorage method) (ModelrunnerStorage method) (MovieStorage method) (StorageBase method) close() (FileStorage method) (JupyterPlottingContext method) (ModelrunnerStorage method) (MovieStorage method) (NapariViewer method) (PlottingContextBase method) codec (FFmpegFormat attribute) compatible_with() (GridBase method) complex (ExpressionBase property) complex_valued (PDEBase attribute) Config (class in pde.tools.config) conjugate() (FieldBase method) ConsistencyTracker (class in pde.trackers.trackers)

constant (ExpressionBase property) ConstantInterrupts (class in pde.trackers.interrupts) ConstBC1stOrderBase (class in pde.grids.boundaries.local) ConstBC2ndOrderBase (class in pde.grids.boundaries.local) ConstBCBase (class in pde.grids.boundaries.local) contains_point() (Cuboid method) (GridBase method) Controller (class in pde.solvers) (class in pde.solvers.controller) ConvergenceError convert() (Parameter method) coordinate_arrays (GridBase attribute) coordinate_constraints (CylindricalSymGrid attribute) (GridBase attribute) (PolarSymGrid attribute) (SphericalSymGrid attribute) coordinate_limits (BipolarCoordinates attribute) (BisphericalCoordinates attribute) (CoordinatesBase attribute) (CylindricalCoordinates attribute) (PolarCoordinates attribute) (SphericalCoordinates attribute) CoordinatesBase (class in pde.grids.coordinates.base) copy() (BCBase method) (Boundaries method) (BoundaryAxisBase method) (BoundaryPeriodic method) (ConstantInterrupts method) (ConstBCBase method) (Cuboid method) (DataFieldBase method) (ExpressionBC method) (FieldBase method) (FieldCollection method) (FixedInterrupts method) (GridBase method) (InterruptsBase method) (MixedBC method) (ScalarExpression method) (StorageBase method) (UserBC method) corners (Cuboid property) count (OnlineStatistics attribute) Counter (class in pde.tools.numba) CrankNicolsonSolver (class in pde.solvers) (class in pde.solvers.crank_nicolson) cuboid (CartesianGrid attribute) Cuboid (class in pde.tools.cuboid) CurvatureBC (class in pde.grids.boundaries.local) CylindricalCoordinates (class in pde.grids.coordinates.cylindrical) CylindricalSymGrid (class in pde.grids.cylindrical)

D

data (DataTracker attribute) (FieldBase property) (FileStorage property) (ModelrunnerStorage property) (MovieStorage property) (StorageBase attribute) data_from_frame() (FFmpegFormat method) data_shape (DataFieldBase property) (StorageBase property) data_to_frame() (FFmpegFormat method) DataFieldBase (class in pde.fields.datafield_base) dataframe (DataTracker property) DataTracker (class in pde.trackers.trackers) decorator_arguments() (in module pde.tools.misc) default_capacity (DictFiniteCapacity attribute) deleter() (classproperty method) depends_on() (ExpressionBase method) DeprecatedParameter (class in pde.tools.parameters) derivative() (SmoothData1D method) derivatives (ScalarExpression attribute) (TensorExpression attribute) diagnostics (Controller attribute), [1] (PDEBase attribute) diagonal (Cuboid property) DictFiniteCapacity (class in pde.tools.cache) difference_vector() (CartesianGrid method) (CylindricalSymGrid method) (GridBase method) difference_vector_real() (GridBase method) differentiate() (ScalarExpression method) (TensorExpression method)

DiffusionPDE (class in pde.pdes.diffusion) dim (BipolarCoordinates attribute) (BisphericalCoordinates attribute) (CoordinatesBase attribute) (Cuboid property) (CylindricalCoordinates attribute) (GridBase property) (PolarCoordinates attribute) (SphericalCoordinates attribute) DimensionError DirichletBC (class in pde.grids.boundaries.local) disable_interactive() (in module pde.tools.plotting) discretization (GridBase property) discretize_interval() (in module pde.grids.base) display_progress() (in module pde.tools.output) distance() (CoordinatesBase method) (GridBase method) distance_real() (GridBase method) divergence() (Tensor2Field method) (VectorField method) DomainError dot() (Tensor2Field method) (VectorField method) dt (InterruptsBase attribute) dt_default (SolverBase attribute) dt_max (AdaptiveSolverBase attribute) dt_min (AdaptiveSolverBase attribute) dtype (FFmpegFormat attribute) (FieldBase property) (StorageBase property)

E

element (PlotReference attribute) end_writing() (FileStorage method) (ModelrunnerStorage method) (MovieStorage method) (StorageBase method) ensure_directory_exists() (in module pde.tools.misc) environment variable PYTHONPATH environment() (in module pde.tools.config) estimate_computation_speed() (in module pde.tools.misc) evaluate() (in module pde.tools.expressions) evolution_rate() (AllenCahnPDE method) (CahnHilliardPDE method) (DiffusionPDE method) (KPZInterfacePDE method) (KuramotoSivashinskyPDE method) (PDE method) (PDEBase method) (SwiftHohenbergPDE method) (WavePDE method) explicit_time_dependence (AllenCahnPDE attribute) (CahnHilliardPDE attribute) (DiffusionPDE attribute) (KPZInterfacePDE attribute) (KuramotoSivashinskyPDE attribute) (PDEBase attribute) (SwiftHohenbergPDE attribute) (WavePDE attribute)

ExplicitMPISolver (class in pde.solvers.explicit_mpi) ExplicitSolver (class in pde.solvers) (class in pde.solvers.explicit) expr_prod() (in module pde.pdes.base) expression (AllenCahnPDE property) (CahnHilliardPDE property) (DiffusionPDE property) (ExpressionBase property) (KPZInterfacePDE property) (KuramotoSivashinskyPDE property) (SwiftHohenbergPDE property) ExpressionBase (class in pde.tools.expressions) ExpressionBC (class in pde.grids.boundaries.local) ExpressionDerivativeBC (class in pde.grids.boundaries.local) ExpressionMixedBC (class in pde.grids.boundaries.local) expressions (PDE property) (WavePDE property) ExpressionValueBC (class in pde.grids.boundaries.local) extract_field() (in module pde.visualization.plotting) (StorageBase method) extract_time_range() (StorageBase method)

F

factory (OperatorInfo attribute) FFmpegFormat (class in pde.tools.ffmpeg) FieldBase (class in pde.fields.base) FieldCollection (class in pde.fields.collection) fields (FieldCollection property) fig (PlottingContextBase attribute) FileStorage (class in pde.storage.file) fill_in_docstring() (in module pde.tools.docstrings) finalize() (DataTracker method) (InteractivePlotTracker method) (PlotTracker method) (ProgressTracker method) (StorageTracker method) (TrackerBase method) (TrackerCollection method) find_format() (in module pde.tools.ffmpeg) FinishedSimulation FixedInterrupts (class in pde.trackers.interrupts) flat_idx() (in module pde.tools.numba) flip_sign (BoundaryPeriodic property) fluctuations (DataFieldBase property) formats (in module pde.tools.ffmpeg) from_bounds() (CartesianGrid class method) (Cuboid class method) (CylindricalSymGrid class method) (GridBase class method) (SphericalSymGridBase class method) from_centerpoint() (Cuboid class method)

from_collection() (MemoryStorage class method) from_data() (BCBase class method) (Boundaries class method) (BoundaryPair class method) (FieldCollection class method) (TrackerBase class method) (TrackerCollection class method) from_dict() (BCBase class method) from_expression() (ScalarField class method) (Tensor2Field class method) (VectorField class method) from_fields() (MemoryStorage class method) from_file() (FieldBase class method) from_image() (ScalarField class method) from_name() (SolverBase class method) from_points() (Cuboid class method) from_scalar_expressions() (FieldCollection class method) from_scalars() (VectorField class method) from_state() (CartesianGrid class method) (CylindricalSymGrid class method) (DataFieldBase class method) (FieldBase class method) (FieldCollection class method) (GridBase class method) (SphericalSymGridBase class method) (UnitGrid class method) from_storage() (ScalarFieldPlot class method) from_str() (BCBase class method)

G

get_all_parameters() (in module pde.tools.parameters) get_axis_index() (GridBase method) get_boundary_axis() (in module pde.grids.boundaries.axis) get_boundary_conditions() (GridBase method) get_boundary_field() (ScalarField method) get_boundary_values() (DataFieldBase method) get_cartesian_grid() (CylindricalSymGrid method) (SphericalSymGridBase method) get_class_by_rank() (DataFieldBase class method) get_common_dtype() (in module pde.tools.misc) get_common_numba_dtype() (in module pde.tools.numba) get_compiled() (ExpressionBase method) get_compiled_array() (TensorExpression method) get_help() (BCBase class method) (Boundaries class method) (BoundaryAxisBase class method) get_image_data() (CartesianGrid method) (CylindricalSymGrid method) (DataFieldBase method) (FieldBase method) (FieldCollection method) (GridBase method) (SphericalSymGridBase method) get_initial_condition() (WavePDE method) get_line_data() (CartesianGrid method) (CylindricalSymGrid method) (DataFieldBase method) (FieldBase method) (FieldCollection method) (GridBase method) (SphericalSymGridBase method) get_mathematical_representation() (BCBase method) (Boundaries method) (BoundaryAxisBase method) (CurvatureBC method) (DirichletBC method) (ExpressionBC method) (MixedBC method) (NeumannBC method) (UserBC method) get_memory_storage() (in module pde.storage.memory)

get_named_trackers() (in module pde.trackers.base) get_package_versions() (in module pde.tools.config) get_parameter_default() (Parameterized method) get_parameters() (Parameterized class method) get_plotting_context() (in module pde.tools.plotting) get_progress_bar_class() (in module pde.tools.output) get_random_point() (CartesianGrid method) (CylindricalSymGrid method) (GridBase method) (SphericalSymGridBase method) get_sparse_matrix_data() (BCBase method) (BoundaryAxisBase method) (ConstBC1stOrderBase method) (ConstBC2ndOrderBase method) (ExpressionBC method) get_text_block() (in module pde.tools.docstrings) get_vector_data() (CartesianGrid method) (DataFieldBase method) (GridBase method) (VectorField method) get_virtual_point() (BCBase method) (ConstBC1stOrderBase method) (ConstBC2ndOrderBase method) (ExpressionBC method) get_virtual_point_data() (ConstBC1stOrderBase method) (ConstBC2ndOrderBase method) (CurvatureBC method) (DirichletBC method) (MixedBC method) (NeumannBC method) getter() (classproperty method) GhostCellSetter (class in pde.tools.typing) gradient() (ScalarField method) (VectorField method) gradient_squared() (ScalarField method) grid (Boundaries attribute) (BoundaryAxisBase property) (FieldBase property) (StorageBase property) (StorageView property) GridBase (class in pde.grids.base)

H

handle() (CallbackTracker method) (ConsistencyTracker method) (DataTracker method) (InteractivePlotTracker method) (MaterialConservationTracker method) (PlotTracker method) (PrintTracker method) (ProgressTracker method) (RuntimeTracker method) (SteadyStateTracker method) (StorageTracker method) (TrackerBase method) (TrackerCollection method)

has_collection (StorageBase property) (StorageView attribute) has_hole (CylindricalSymGrid property) (SphericalSymGridBase property) hash_mutable() (in module pde.tools.cache) hash_readable() (in module pde.tools.cache) hdf_write_attributes() (in module pde.tools.misc) HideParameter (class in pde.tools.parameters) high (BoundaryAxisBase attribute) homogeneous (BCBase attribute) hybridmethod (class in pde.tools.misc)

I

imag (FieldBase property) ImplicitSolver (class in pde.solvers) (class in pde.solvers.implicit) import_class() (in module pde.tools.misc) in_ipython() (in module pde.tools.plotting) in_jupyter_notebook() (in module pde.tools.output) increment() (Counter method) info (AdamsBashforthSolver attribute) (Controller attribute) (CrankNicolsonSolver attribute) (ExplicitSolver attribute) (ImplicitSolver attribute) (ScipySolver attribute) initialize() (ConstantInterrupts method) (FixedInterrupts method) (InteractivePlotTracker method) (InterruptsBase method) (MaterialConservationTracker method) (PlotTracker method) (ProgressTracker method) (RealtimeInterrupts method) (RuntimeTracker method) (StorageTracker method) (TrackerBase method) (TrackerCollection method) initialized (in module pde.tools.mpi)

insert() (DataFieldBase method) instancemethod() (hybridmethod method) integral (DataFieldBase property) (ScalarField property) (Tensor2Field property) (VectorField property) integrals (FieldCollection property) integrate() (GridBase method) InteractivePlotTracker (class in pde.trackers.interactive) interface_width (AllenCahnPDE attribute) interpolate() (DataFieldBase method) interpolate_to_grid() (DataFieldBase method) (FieldCollection method) (ScalarField method) (VectorField method) InterruptsBase (class in pde.trackers.interrupts) is_available() (Movie class method) is_complex (FieldBase property) is_main (in module pde.tools.mpi) is_sde (PDEBase property) is_zero (ScalarExpression property) items() (MovieStorage method) (StorageBase method) (StorageView method) iter_mirror_points() (CartesianGrid method) (CylindricalSymGrid method) (GridBase method)

J

jit() (in module pde.tools.numba)

JupyterOutput (class in pde.tools.output) JupyterPlottingContext (class in pde.tools.plotting)

K

KPZInterfacePDE (class in pde.pdes.kpz_interface)

KuramotoSivashinskyPDE (class in pde.pdes.kuramoto_sivashinsky)

L

label (FieldBase property) labels (FieldCollection property) laplace() (ScalarField method) (VectorField method)

length (CylindricalSymGrid property) link_value() (ConstBCBase method) LivePlotTracker (class in pde.trackers.trackers) LogarithmicInterrupts (class in pde.trackers.interrupts) low (BoundaryAxisBase attribute)

M

magnitude (DataFieldBase property) magnitudes (FieldCollection property) major_axis (SphericalCoordinates attribute) make_adjacent_evaluator() (BCBase method) (ConstBC1stOrderBase method) (ConstBC2ndOrderBase method) (ExpressionBC method) make_array_constructor() (in module pde.tools.numba) make_cell_volume_compiled() (GridBase method) make_colored_noise() (in module pde.tools.spectral) make_derivative() (in module pde.grids.operators.common) make_derivative2() (in module pde.grids.operators.common) make_divergence() (in module pde.grids.operators.cartesian) (in module pde.grids.operators.cylindrical_sym) (in module pde.grids.operators.polar_sym) (in module pde.grids.operators.spherical_sym) make_dot_operator() (DataFieldBase method) make_general_poisson_solver() (in module pde.grids.operators.common) make_ghost_cell_sender() (BCBase method) make_ghost_cell_setter() (BCBase method) (Boundaries method) (BoundaryAxisBase method) (UserBC method) make_gradient() (in module pde.grids.operators.cartesian) (in module pde.grids.operators.cylindrical_sym) (in module pde.grids.operators.polar_sym) (in module pde.grids.operators.spherical_sym) make_gradient_squared() (in module pde.grids.operators.cylindrical_sym) (in module pde.grids.operators.polar_sym) (in module pde.grids.operators.spherical_sym) make_inserter_compiled() (GridBase method) make_integrator() (GridBase method) make_interpolator() (DataFieldBase method) make_laplace() (in module pde.grids.operators.cartesian) (in module pde.grids.operators.cylindrical_sym) (in module pde.grids.operators.polar_sym) (in module pde.grids.operators.spherical_sym) make_laplace_from_matrix() (in module pde.grids.operators.common) make_movie() (ScalarFieldPlot method) make_normalize_point_compiled() (GridBase method) make_operator() (GridBase method) make_operator_no_bc() (GridBase method) make_outer_prod_operator() (VectorField method) make_pde_rhs() (PDEBase method) make_poisson_solver() (in module pde.grids.operators.cartesian) (in module pde.grids.operators.cylindrical_sym) (in module pde.grids.operators.polar_sym) (in module pde.grids.operators.spherical_sym) make_post_step_hook() (PDEBase method) make_sde_rhs() (PDEBase method) make_serializer() (in module pde.tools.cache) make_stepper() (AdaptiveSolverBase method) (ExplicitMPISolver method) (ScipySolver method), [1] (SolverBase method) make_tensor_divergence() (in module pde.grids.operators.cartesian) (in module pde.grids.operators.cylindrical_sym) (in module pde.grids.operators.polar_sym) (in module pde.grids.operators.spherical_sym) make_tensor_double_divergence() (in module pde.grids.operators.spherical_sym) make_unserializer() (in module pde.tools.cache) make_vector_gradient() (in module pde.grids.operators.cartesian) (in module pde.grids.operators.cylindrical_sym) (in module pde.grids.operators.polar_sym) (in module pde.grids.operators.spherical_sym) make_vector_laplace() (in module pde.grids.operators.cartesian) (in module pde.grids.operators.cylindrical_sym) make_virtual_point_evaluator() (BCBase method) (ConstBC1stOrderBase method) (ConstBC2ndOrderBase method) (ExpressionBC method) (UserBC method) mapping_jacobian() (CoordinatesBase method) MaterialConservationTracker (class in pde.trackers.trackers) max_value (FFmpegFormat property) mean (OnlineStatistics attribute) MemoryStorage (class in pde.storage.memory) metric() (CoordinatesBase method) MixedBC (class in pde.grids.boundaries.local) ModelrunnerStorage (class in pde.storage.modelrunner) module pde pde.fields pde.fields.base pde.fields.collection pde.fields.datafield_base pde.fields.scalar pde.fields.tensorial pde.fields.vectorial pde.grids pde.grids.base pde.grids.boundaries pde.grids.boundaries.axes pde.grids.boundaries.axis pde.grids.boundaries.local pde.grids.cartesian pde.grids.coordinates pde.grids.coordinates.base pde.grids.coordinates.bipolar pde.grids.coordinates.bispherical pde.grids.coordinates.cartesian pde.grids.coordinates.cylindrical pde.grids.coordinates.polar pde.grids.coordinates.spherical pde.grids.cylindrical pde.grids.operators pde.grids.operators.cartesian pde.grids.operators.common pde.grids.operators.cylindrical_sym pde.grids.operators.polar_sym pde.grids.operators.spherical_sym pde.grids.spherical pde.pdes pde.pdes.allen_cahn pde.pdes.base pde.pdes.cahn_hilliard pde.pdes.diffusion pde.pdes.kpz_interface pde.pdes.kuramoto_sivashinsky pde.pdes.laplace pde.pdes.pde pde.pdes.swift_hohenberg pde.pdes.wave pde.solvers pde.solvers.adams_bashforth pde.solvers.base pde.solvers.controller pde.solvers.crank_nicolson pde.solvers.explicit pde.solvers.explicit_mpi pde.solvers.implicit pde.solvers.scipy pde.storage pde.storage.base pde.storage.file pde.storage.memory pde.storage.modelrunner pde.storage.movie pde.tools pde.tools.cache pde.tools.config pde.tools.cuboid pde.tools.docstrings pde.tools.expressions pde.tools.ffmpeg pde.tools.math pde.tools.misc pde.tools.modelrunner pde.tools.mpi pde.tools.numba pde.tools.output pde.tools.parameters pde.tools.parse_duration pde.tools.plotting pde.tools.spectral pde.tools.typing pde.trackers pde.trackers.base pde.trackers.interactive pde.trackers.interrupts pde.trackers.trackers pde.visualization pde.visualization.movies pde.visualization.plotting

module_available() (in module pde.tools.misc) Movie (class in pde.visualization.movies) movie() (in module pde.visualization.movies) movie_multiple() (in module pde.visualization.movies) movie_scalar() (in module pde.visualization.movies) MovieStorage (class in pde.storage.movie) mpi_allreduce() (in module pde.tools.mpi) mpi_recv() (in module pde.tools.mpi) mpi_send() (in module pde.tools.mpi) mutable (Cuboid property)

N

name (AdamsBashforthSolver attribute), [1] (ConsistencyTracker attribute) (CrankNicolsonSolver attribute), [1] (ExplicitMPISolver attribute) (ExplicitSolver attribute), [1] (ImplicitSolver attribute), [1] (InteractivePlotTracker attribute) (LivePlotTracker attribute) (MaterialConservationTracker attribute) (OperatorInfo attribute) (PrintTracker attribute) (ProgressTracker attribute) (ScipySolver attribute), [1] (SteadyStateTracker attribute) names (BCBase attribute) (CurvatureBC attribute) (DirichletBC attribute) (ExpressionBC attribute) (ExpressionDerivativeBC attribute) (ExpressionMixedBC attribute) (ExpressionValueBC attribute) (MixedBC attribute) (NeumannBC attribute) (NormalCurvatureBC attribute) (NormalDirichletBC attribute) (NormalMixedBC attribute) (NormalNeumannBC attribute) (UserBC attribute)

napari_add_layers() (in module pde.tools.plotting) napari_process() (in module pde.trackers.interactive) napari_viewer() (in module pde.tools.plotting) NapariViewer (class in pde.trackers.interactive) nested_plotting_check (class in pde.tools.plotting) NeumannBC (class in pde.grids.boundaries.local) next() (ConstantInterrupts method) (FixedInterrupts method) (InterruptsBase method) (LogarithmicInterrupts method) (RealtimeInterrupts method) noise_realization() (PDEBase method) normal (BCBase attribute) (NormalCurvatureBC attribute) (NormalDirichletBC attribute) (NormalMixedBC attribute) (NormalNeumannBC attribute) NormalCurvatureBC (class in pde.grids.boundaries.local) NormalDirichletBC (class in pde.grids.boundaries.local) normalize_point() (GridBase method) NormalMixedBC (class in pde.grids.boundaries.local) NormalNeumannBC (class in pde.grids.boundaries.local) num_axes (GridBase attribute) num_cells (GridBase property) numba_dict() (in module pde.tools.numba) numba_environment() (in module pde.tools.numba) numba_type (GridBase property) number() (in module pde.tools.misc) number_array() (in module pde.tools.misc)

O

objects_equal() (in module pde.tools.cache) ol_flat_idx() (in module pde.tools.numba) ol_mpi_allreduce() (in module pde.tools.mpi) ol_mpi_recv() (in module pde.tools.mpi) ol_mpi_send() (in module pde.tools.mpi) OnlineStatistics (class in pde.tools.math)

OperatorFactory (class in pde.tools.typing) OperatorInfo (class in pde.grids.base) operators (GridBase attribute) OperatorType (class in pde.tools.typing) outer_product() (VectorField method) OutputBase (class in pde.tools.output)

P

packages_from_requirements() (in module pde.tools.config) parallel_run (in module pde.tools.mpi) Parameter (class in pde.tools.parameters) Parameterized (class in pde.tools.parameters) parameters (PlotReference attribute) parameters_default (Parameterized attribute) parse_duration() (in module pde.tools.parse_duration) parse_interrupt() (in module pde.trackers.interrupts) parse_number() (in module pde.tools.expressions) parse_version_str() (in module pde.tools.config) pde module PDE (class in pde.pdes.pde) pde.fields module pde.fields.base module pde.fields.collection module pde.fields.datafield_base module pde.fields.scalar module pde.fields.tensorial module pde.fields.vectorial module pde.grids module pde.grids.base module pde.grids.boundaries module pde.grids.boundaries.axes module pde.grids.boundaries.axis module pde.grids.boundaries.local module pde.grids.cartesian module pde.grids.coordinates module pde.grids.coordinates.base module pde.grids.coordinates.bipolar module pde.grids.coordinates.bispherical module pde.grids.coordinates.cartesian module pde.grids.coordinates.cylindrical module pde.grids.coordinates.polar module pde.grids.coordinates.spherical module pde.grids.cylindrical module pde.grids.operators module pde.grids.operators.cartesian module pde.grids.operators.common module pde.grids.operators.cylindrical_sym module pde.grids.operators.polar_sym module pde.grids.operators.spherical_sym module pde.grids.spherical module pde.pdes module pde.pdes.allen_cahn module pde.pdes.base module pde.pdes.cahn_hilliard module pde.pdes.diffusion module pde.pdes.kpz_interface module pde.pdes.kuramoto_sivashinsky module pde.pdes.laplace module pde.pdes.pde module pde.pdes.swift_hohenberg module pde.pdes.wave module pde.solvers module pde.solvers.adams_bashforth module pde.solvers.base module pde.solvers.controller module pde.solvers.crank_nicolson module pde.solvers.explicit module

pde.solvers.explicit_mpi module pde.solvers.implicit module pde.solvers.scipy module pde.storage module pde.storage.base module pde.storage.file module pde.storage.memory module pde.storage.modelrunner module pde.storage.movie module pde.tools module pde.tools.cache module pde.tools.config module pde.tools.cuboid module pde.tools.docstrings module pde.tools.expressions module pde.tools.ffmpeg module pde.tools.math module pde.tools.misc module pde.tools.modelrunner module pde.tools.mpi module pde.tools.numba module pde.tools.output module pde.tools.parameters module pde.tools.parse_duration module pde.tools.plotting module pde.tools.spectral module pde.tools.typing module pde.trackers module pde.trackers.base module pde.trackers.interactive module pde.trackers.interrupts module pde.trackers.trackers module pde.visualization module pde.visualization.movies module pde.visualization.plotting module PDEBase (class in pde.pdes.base) periodic (BCBase property) (Boundaries property) (BoundaryAxisBase property) (GridBase property) PeriodicityError pix_fmt_data (FFmpegFormat attribute) pix_fmt_file (FFmpegFormat attribute) plot() (CartesianGrid method) (DataFieldBase method) (FieldBase method) (FieldCollection method) (GridBase method) (SphericalSymGridBase method) plot_components() (Tensor2Field method) plot_interactive() (FieldBase method) (in module pde.visualization.plotting) plot_kymograph() (in module pde.visualization.plotting) plot_kymographs() (in module pde.visualization.plotting) plot_magnitudes() (in module pde.visualization.plotting) plot_on_axes() (in module pde.tools.plotting) plot_on_figure() (in module pde.tools.plotting) PlotReference (class in pde.tools.plotting) PlottingContextBase (class in pde.tools.plotting) PlotTracker (class in pde.trackers.trackers) point_from_cartesian() (GridBase method) point_to_cartesian() (GridBase method) PolarCoordinates (class in pde.grids.coordinates.polar) PolarSymGrid (class in pde.grids.spherical) pos_diff() (CoordinatesBase method) pos_from_cart() (CoordinatesBase method) pos_to_cart() (CoordinatesBase method) preserve_scalars() (in module pde.tools.misc) PrintTracker (class in pde.trackers.trackers) progress_bar_format (SteadyStateTracker attribute) ProgressTracker (class in pde.trackers.trackers) project() (ScalarField method) PYTHONPATH

R

radius (CylindricalSymGrid property) (SphericalSymGridBase property) random_colored() (DataFieldBase class method) random_harmonic() (DataFieldBase class method) random_normal() (DataFieldBase class method) random_seed() (in module pde.tools.numba) random_uniform() (DataFieldBase class method) rank (BoundaryAxisBase property) (DataFieldBase attribute) (ExpressionBase property) (in module pde.tools.mpi) (ScalarField attribute) (Tensor2Field attribute) (TensorExpression property) (VectorField attribute)

rank_in (OperatorInfo attribute) rank_out (OperatorInfo attribute) RankError real (FieldBase property) RealtimeInterrupts (class in pde.trackers.interrupts) register_operator() (GridBase class method) registered_boundary_condition_classes() (in module pde.grids.boundaries.local) registered_boundary_condition_names() (in module pde.grids.boundaries.local) registered_operators() (in module pde.grids.base) registered_solvers (SolverBase attribute) registered_solvers() (in module pde.solvers) replace_in_docstring() (in module pde.tools.docstrings) run() (Controller method), [1] RuntimeTracker (class in pde.trackers.trackers)

S

save() (Movie method) savefig() (ScalarFieldPlot method) scalar_random_uniform() (FieldCollection class method) ScalarExpression (class in pde.tools.expressions) ScalarField (class in pde.fields.scalar) ScalarFieldPlot (class in pde.visualization.plotting) scale_factors() (CoordinatesBase method) ScipySolver (class in pde.solvers) (class in pde.solvers.scipy) SerializedDict (class in pde.tools.cache) set_ghost_cells() (BCBase method) (Boundaries method) (BoundaryAxisBase method) (ConstBC1stOrderBase method) (ConstBC2ndOrderBase method) (DataFieldBase method) (ExpressionBC method) (UserBC method) setter() (classproperty method) shape (ExpressionBase property) (GridBase property) (ScalarExpression attribute) (StorageBase property) (TensorExpression property) show() (BasicOutput method) (JupyterOutput method) (OutputBase method) show_parameters() (Parameterized method) sigma_auto_scale (SmoothData1D attribute) size (Cuboid property) (in module pde.tools.mpi) slice() (CartesianGrid method) (CylindricalSymGrid method) (GridBase method) (ScalarField method) (UnitGrid method)

smooth() (DataFieldBase method) (FieldCollection method) SmoothData1D (class in pde.tools.math) solve() (PDEBase method) solve_laplace_equation() (in module pde.pdes.laplace) solve_poisson_equation() (in module pde.pdes.laplace) SolverBase (class in pde.solvers.base) SphericalCoordinates (class in pde.grids.coordinates.spherical) SphericalSymGrid (class in pde.grids.spherical) SphericalSymGridBase (class in pde.grids.spherical) sphinx_display_parameters() (in module pde.tools.parameters) split_mpi() (FieldBase method) start_writing() (FileStorage method) (MemoryStorage method) (ModelrunnerStorage method) (MovieStorage method) (StorageBase method) state (CartesianGrid property) (CylindricalSymGrid property) (GridBase property) (SphericalSymGridBase property) (UnitGrid property) state_serialized (GridBase property) SteadyStateTracker (class in pde.trackers.trackers) StepperHook (class in pde.tools.typing) storage (StorageTracker attribute) StorageBase (class in pde.storage.base) StorageTracker (class in pde.storage.base) StorageView (class in pde.storage.base) supports_update (JupyterPlottingContext attribute) (PlottingContextBase attribute) surface_area (Cuboid property) SwiftHohenbergPDE (class in pde.pdes.swift_hohenberg) symmetrize() (Tensor2Field method)

T

t_range (Controller property), [1] Tensor2Field (class in pde.fields.tensorial) TensorExpression (class in pde.tools.expressions) time_next_action (TrackerCollection attribute) times (DataTracker attribute) (FileStorage property) (ModelrunnerStorage property) (MovieStorage attribute) (StorageBase attribute) (StorageView property) to_cartesian() (UnitGrid method) to_dict() (Config method) to_file() (DataTracker method) (FieldBase method) to_scalar() (DataFieldBase method) (ScalarField method) (Tensor2Field method) (VectorField method)

to_subgrid() (BCBase method) (ConstBCBase method) (ExpressionBC method) (MixedBC method) (UserBC method) trace() (Tensor2Field method) tracker() (MovieStorage method) (StorageBase method) tracker_action_times (TrackerCollection attribute) TrackerBase (class in pde.trackers.base) TrackerCollection (class in pde.trackers.base) trackers (TrackerCollection attribute) transform() (GridBase method) transpose() (Tensor2Field method) typical_discretization (GridBase property)

U

uniform_cell_volumes (GridBase attribute) uniform_discretization() (in module pde.grids.operators.common) UnitGrid (class in pde.grids.cartesian) unserialize_attributes() (DataFieldBase class method) (FieldBase class method) (FieldCollection class method)

update() (DictFiniteCapacity method) (NapariViewer method) (ScalarFieldPlot method) UserBC (class in pde.grids.boundaries.local)

V

value (ConstBCBase property) (ScalarExpression property) (TensorExpression property) value_is_linked (ConstBCBase attribute) variables (PDE attribute) vec_to_cart() (CoordinatesBase method) VectorField (class in pde.fields.vectorial) vertices (Cuboid property)

view_field() (StorageBase method) VirtualPointEvaluator (class in pde.tools.typing) volume (CartesianGrid property) (Cuboid property) (CylindricalSymGrid property) (GridBase property) (SphericalSymGridBase property) volume_factor() (CoordinatesBase method) volume_from_radius() (in module pde.grids.spherical)

W

WavePDE (class in pde.pdes.wave)

write_mode (StorageBase attribute) writeable (FieldBase property)