4.7.2 pde.trackers.interactive module

Special module for defining an interactive tracker that uses napari to display fields

class InteractivePlotTracker(interrupts='0:01', *, close=True, show_time=False, interval=None)[source]

Bases: TrackerBase

Tracker showing the state interactively in napari


The interactive tracker uses the python multiprocessing module to run napari externally. The multiprocessing module has limitations on some platforms, which requires some care when writing your own programs. In particular, the main method needs to be safe-guarded so that the main module can be imported again after spawning a new process. An established pattern that works is to introduce a function main in your code, which you call using the following pattern

def main():
    # here goes your main code

if __name__ == "__main__":

The last two lines ensure that the main function is only called when the module is run initially and not again when it is re-imported.

  • interrupts (InterruptData) – Determines when the tracker interrupts the simulation. A single numbers determines an interval (measured in the simulation time unit) of regular interruption. A string is interpreted as a duration in real time assuming the format ‘hh:mm:ss’. A list of numbers is taken as explicit simulation time points. More fine- grained contol is possible by passing an instance of classes defined in interrupts.

  • close (bool) – Flag indicating whether the napari window is closed automatically at the end of the simulation. If False, the tracker blocks when finalize is called until the user closes napari manually.

  • show_time (bool) – Whether to indicate the time


finalize the tracker, supplying additional information


info (dict) – Extra information from the simulation

Return type:


handle(state, t)[source]

handle data supplied to this tracker

  • state (FieldBase) – The current state of the simulation

  • t (float) – The associated time

Return type:


initialize(state, info=None)[source]

initialize the tracker with information about the simulation

  • state (FieldBase) – An example of the data that will be analyzed by the tracker

  • info (dict) – Extra information from the simulation


The first time the tracker needs to handle data

Return type:


name = 'interactive'
class NapariViewer(state, t_initial=None)[source]

Bases: object

allows viewing and updating data in a separate napari process


closes the napari process


force (bool) – Whether to force closing of the napari program. If this is False, this method blocks until the user closes napari manually.

update(state, t)[source]

update the state in the napari viewer

napari_process(data_channel, initial_data, t_initial=None, viewer_args=None)[source]

multiprocessing.Process running napari

  • data_channel (multiprocessing.Queue) – queue instance to receive data to view

  • initial_data (dict) – Initial data to be shown by napari. The layers are named according to the keys in the dictionary. The associated value needs to be a tuple, where the first item is a string indicating the type of the layer and the second carries the associated data

  • t_initial (float) – Initial time

  • viewer_args (dict) – Additional arguments passed to the napari viewer